Read alignment and SNP calling performed by Jemima Brinton

Jemima Brinton, Cristobal Uauy
Data description: SNP calls against IWGSC Chinese Spring RefSeq v1.0 chromosome parts from exome capture data of 103 accessions of the Watkins landrace collection. Raw reads generated by and published in "Hidden variation in polyploid wheat drives local adaptation" by Gardiner et al, Gigascience, 2017 (doi: 10.1101/gr.233551.117).
This data is made available under the Toronto Agreement
All of the data listed here is available under the prepublication data sharing principle of the Toronto agreement. By using this data, you agree to:
  • respect the rights of the data producers and contributors to analyze and publish the first global analyses and certain other reserved analyses of this data set in a peer-reviewed publication.
  • not redistribute, release, or otherwise provide access to the data to anyone outside of the group, until the data has been published & submitted to the public data repositories.
  • contact the authors to discuss any plans to publish data or analyses that utilize this data to avoid the overlap of any planned analyses.
  • fully cite the prepublication data along with any applicable versioning details.
  • understand that this data as accessed is precompetitive and is not patentable in its present state.
This agreement does not expire by time but only upon publication of the first global analysis by the data producers and contributors.
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          NameSizeDateProperties
          iRods Data ObjectREADME_Gardiner_et_al_2017_Watkins_exome_capture_SNP_calls_VCF.txt3.7KB2021-03-01 10:37
          iRods Data Objectdatapackage.json 17KB2021-03-01 20:37
          iRods Data Objectmultiple_bam_watkins_hall_chr1A_part1.vcf.gz1.3GB2021-03-01 10:41
          iRods Data Objectmultiple_bam_watkins_hall_chr1A_part2.vcf.gz431MB2021-03-01 10:40
          iRods Data Objectmultiple_bam_watkins_hall_chr1B_part1.vcf.gz1.2GB2021-03-01 10:37
          iRods Data Objectmultiple_bam_watkins_hall_chr1B_part2.vcf.gz773MB2021-03-01 10:41
          iRods Data Objectmultiple_bam_watkins_hall_chr1D_part1.vcf.gz1.1GB2021-03-01 10:39
          iRods Data Objectmultiple_bam_watkins_hall_chr1D_part2.vcf.gz143MB2021-03-01 10:39
          iRods Data Objectmultiple_bam_watkins_hall_chr2A_part1.vcf.gz1.2GB2021-03-01 10:40
          iRods Data Objectmultiple_bam_watkins_hall_chr2A_part2.vcf.gz882MB2021-03-01 10:38
          iRods Data Objectmultiple_bam_watkins_hall_chr2B_part1.vcf.gz1.2GB2021-03-01 10:38
          iRods Data Objectmultiple_bam_watkins_hall_chr2B_part2.vcf.gz1.0GB2021-03-01 10:38
          iRods Data Objectmultiple_bam_watkins_hall_chr2D_part1.vcf.gz1.1GB2021-03-01 10:36
          iRods Data Objectmultiple_bam_watkins_hall_chr2D_part2.vcf.gz519MB2021-03-01 10:39
          iRods Data Objectmultiple_bam_watkins_hall_chr3A_part1.vcf.gz1.0GB2021-03-01 10:37
          iRods Data Objectmultiple_bam_watkins_hall_chr3A_part2.vcf.gz835MB2021-03-01 10:39
          iRods Data Objectmultiple_bam_watkins_hall_chr3B_part1.vcf.gz1.3GB2021-03-01 10:42
          iRods Data Objectmultiple_bam_watkins_hall_chr3B_part2.vcf.gz1.1GB2021-03-01 10:42
          iRods Data Objectmultiple_bam_watkins_hall_chr3D_part1.vcf.gz1.1GB2021-03-01 10:37
          iRods Data Objectmultiple_bam_watkins_hall_chr3D_part2.vcf.gz396MB2021-03-01 10:37
          iRods Data Objectmultiple_bam_watkins_hall_chr4A_part1.vcf.gz1.0GB2021-03-01 10:36
          iRods Data Objectmultiple_bam_watkins_hall_chr4A_part2.vcf.gz851MB2021-03-01 10:42
          iRods Data Objectmultiple_bam_watkins_hall_chr4B_part1.vcf.gz1.1GB2021-03-01 10:39
          iRods Data Objectmultiple_bam_watkins_hall_chr4B_part2.vcf.gz613MB2021-03-01 10:40
          iRods Data Objectmultiple_bam_watkins_hall_chr4D_part1.vcf.gz973MB2021-03-01 10:38
          iRods Data Objectmultiple_bam_watkins_hall_chr4D_part2.vcf.gz169MB2021-03-01 10:37
          iRods Data Objectmultiple_bam_watkins_hall_chr5A_part1.vcf.gz1.0GB2021-03-01 10:40
          iRods Data Objectmultiple_bam_watkins_hall_chr5A_part2.vcf.gz789MB2021-03-01 10:38
          iRods Data Objectmultiple_bam_watkins_hall_chr5B_part1.vcf.gz1.2GB2021-03-01 10:41
          iRods Data Objectmultiple_bam_watkins_hall_chr5B_part2.vcf.gz846MB2021-03-01 10:39
          iRods Data Objectmultiple_bam_watkins_hall_chr5D_part1.vcf.gz1.1GB2021-03-01 10:36
          iRods Data Objectmultiple_bam_watkins_hall_chr5D_part2.vcf.gz343MB2021-03-01 10:39
          iRods Data Objectmultiple_bam_watkins_hall_chr6A_part1.vcf.gz1.0GB2021-03-01 10:41
          iRods Data Objectmultiple_bam_watkins_hall_chr6A_part2.vcf.gz464MB2021-03-01 10:42
          iRods Data Objectmultiple_bam_watkins_hall_chr6B_part1.vcf.gz1.2GB2021-03-01 10:37
          iRods Data Objectmultiple_bam_watkins_hall_chr6B_part2.vcf.gz830MB2021-03-01 10:36
          iRods Data Objectmultiple_bam_watkins_hall_chr6D_part1.vcf.gz1.1GB2021-03-01 10:36
          iRods Data Objectmultiple_bam_watkins_hall_chr6D_part2.vcf.gz 92MB2021-03-01 10:40
          iRods Data Objectmultiple_bam_watkins_hall_chr7A_part1.vcf.gz1.2GB2021-03-01 10:38
          iRods Data Objectmultiple_bam_watkins_hall_chr7A_part2.vcf.gz507MB2021-03-01 10:40
          iRods Data Objectmultiple_bam_watkins_hall_chr7B_part1.vcf.gz1.2GB2021-03-01 10:41
          iRods Data Objectmultiple_bam_watkins_hall_chr7B_part2.vcf.gz892MB2021-03-01 10:39
          iRods Data Objectmultiple_bam_watkins_hall_chr7D_part1.vcf.gz1.1GB2021-03-01 10:40
          iRods Data Objectmultiple_bam_watkins_hall_chr7D_part2.vcf.gz516MB2021-03-01 10:37
          iRods Data Objectmultiple_bam_watkins_hall_chrUn.vcf.gz2.2MB2021-03-01 10:39