This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012) (format=pdflatex 2013.2.1) 25 SEP 2015 01:38 entering extended mode restricted \write18 enabled. %&-line parsing enabled. **/tgac/workarea/group-si/marc/E.coli_MARC1_run2/latex/E.coli_MARC1_run2.tex (/tgac/workarea/group-si/marc/E.coli_MARC1_run2/latex/E.coli_MARC1_run2.tex LaTeX2e <2011/06/27> Babel and hyphenation patterns for english, dumylang, nohyphenation, ge rman-x-2012-05-30, ngerman-x-2012-05-30, afrikaans, ancientgreek, ibycus, arabi c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danis h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi, finnis h, french, friulan, galician, german, ngerman, swissgerman, monogreek, greek, h ungarian, icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam, ma rathi, oriya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian, kurmanji, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk, polish, portuguese, romanian, romansh, russian, sanskrit, serbian, serbianc, s lovak, slovenian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian, welsh, loaded. (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ba se/article.cls Document Class: article 2007/10/19 v1.4h Standard LaTeX document class (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ba se/size11.clo File: size11.clo 2007/10/19 v1.4h Standard LaTeX file (size option) ) \c@part=\count79 \c@section=\count80 \c@subsection=\count81 \c@subsubsection=\count82 \c@paragraph=\count83 \c@subparagraph=\count84 \c@figure=\count85 \c@table=\count86 \abovecaptionskip=\skip41 \belowcaptionskip=\skip42 \bibindent=\dimen102 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/gr aphics/graphicx.sty Package: graphicx 1999/02/16 v1.0f Enhanced LaTeX Graphics (DPC,SPQR) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/gr aphics/keyval.sty Package: keyval 1999/03/16 v1.13 key=value parser (DPC) \KV@toks@=\toks14 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/gr aphics/graphics.sty Package: graphics 2009/02/05 v1.0o Standard LaTeX Graphics (DPC,SPQR) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/gr aphics/trig.sty Package: trig 1999/03/16 v1.09 sin cos tan (DPC) ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/la texconfig/graphics.cfg File: graphics.cfg 2010/04/23 v1.9 graphics configuration of TeX Live ) Package graphics Info: Driver file: pdftex.def on input line 91. (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/pd ftex-def/pdftex.def File: pdftex.def 2011/05/27 v0.06d Graphics/color for pdfTeX (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/infwarerr.sty Package: infwarerr 2010/04/08 v1.3 Providing info/warning/error messages (HO) ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/ltxcmds.sty Package: ltxcmds 2011/11/09 v1.22 LaTeX kernel commands for general use (HO) ) \Gread@gobject=\count87 )) \Gin@req@height=\dimen103 \Gin@req@width=\dimen104 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ur l/url.sty \Urlmuskip=\muskip10 Package: url 2006/04/12 ver 3.3 Verb mode for urls, etc. ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/mu ltirow/multirow.sty \bigstrutjot=\dimen105 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ro tating/rotating.sty Package: rotating 2009/03/28 v2.16a rotated objects in LaTeX (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ba se/ifthen.sty Package: ifthen 2001/05/26 v1.1c Standard LaTeX ifthen package (DPC) ) \c@r@tfl@t=\count88 \rotFPtop=\skip43 \rotFPbot=\skip44 \rot@float@box=\box26 \rot@mess@toks=\toks15 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/gr aphics/color.sty Package: color 2005/11/14 v1.0j Standard LaTeX Color (DPC) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/la texconfig/color.cfg File: color.cfg 2007/01/18 v1.5 color configuration of teTeX/TeXLive ) Package color Info: Driver file: pdftex.def on input line 130. ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ti tlesec/titlesec.sty Package: titlesec 2011/12/15 v2.10.0 Sectioning titles \ttl@box=\box27 \beforetitleunit=\skip45 \aftertitleunit=\skip46 \ttl@plus=\dimen106 \ttl@minus=\dimen107 \ttl@toksa=\toks16 \titlewidth=\dimen108 \titlewidthlast=\dimen109 \titlewidthfirst=\dimen110 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ge ometry/geometry.sty Package: geometry 2010/09/12 v5.6 Page Geometry (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/ifpdf.sty Package: ifpdf 2011/01/30 v2.3 Provides the ifpdf switch (HO) Package ifpdf Info: pdfTeX in PDF mode is detected. ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/ifvtex.sty Package: ifvtex 2010/03/01 v1.5 Detect VTeX and its facilities (HO) Package ifvtex Info: VTeX not detected. ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ ifxetex/ifxetex.sty Package: ifxetex 2010/09/12 v0.6 Provides ifxetex conditional ) \Gm@cnth=\count89 \Gm@cntv=\count90 \c@Gm@tempcnt=\count91 \Gm@bindingoffset=\dimen111 \Gm@wd@mp=\dimen112 \Gm@odd@mp=\dimen113 \Gm@even@mp=\dimen114 \Gm@layoutwidth=\dimen115 \Gm@layoutheight=\dimen116 \Gm@layouthoffset=\dimen117 \Gm@layoutvoffset=\dimen118 \Gm@dimlist=\toks17 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/fl oat/float.sty Package: float 2001/11/08 v1.3d Float enhancements (AL) \c@float@type=\count92 \float@exts=\toks18 \float@box=\box28 \@float@everytoks=\toks19 \@floatcapt=\box29 ) \@float@every@table=\toks20 No file E.coli_MARC1_run2.aux. \openout1 = `E.coli_MARC1_run2.aux'. LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 11. LaTeX Font Info: ... okay on input line 11. LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 11. LaTeX Font Info: ... okay on input line 11. LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 11. LaTeX Font Info: ... okay on input line 11. LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 11. LaTeX Font Info: ... okay on input line 11. LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 11. LaTeX Font Info: ... okay on input line 11. LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 11. LaTeX Font Info: ... okay on input line 11. (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/context/ base/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] \scratchcounter=\count93 \scratchdimen=\dimen119 \scratchbox=\box30 \nofMPsegments=\count94 \nofMParguments=\count95 \everyMPshowfont=\toks21 \MPscratchCnt=\count96 \MPscratchDim=\dimen120 \MPnumerator=\count97 \makeMPintoPDFobject=\count98 \everyMPtoPDFconversion=\toks22 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/pdftexcmds.sty Package: pdftexcmds 2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/ifluatex.sty Package: ifluatex 2010/03/01 v1.3 Provides the ifluatex switch (HO) Package ifluatex Info: LuaTeX not detected. ) Package pdftexcmds Info: LuaTeX not detected. Package pdftexcmds Info: \pdf@primitive is available. Package pdftexcmds Info: \pdf@ifprimitive is available. Package pdftexcmds Info: \pdfdraftmode found. ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ob erdiek/epstopdf-base.sty Package: epstopdf-base 2010/02/09 v2.5 Base part for package epstopdf (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ob erdiek/grfext.sty Package: grfext 2010/08/19 v1.1 Manage graphics extensions (HO) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/kvdefinekeys.sty Package: kvdefinekeys 2011/04/07 v1.3 Define keys (HO) )) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ob erdiek/kvoptions.sty Package: kvoptions 2011/06/30 v3.11 Key value format for package options (HO) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/kvsetkeys.sty Package: kvsetkeys 2012/04/25 v1.16 Key value parser (HO) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/etexcmds.sty Package: etexcmds 2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO) Package etexcmds Info: Could not find \expanded. (etexcmds) That can mean that you are not using pdfTeX 1.50 or (etexcmds) that some package has redefined \expanded. (etexcmds) In the latter case, load this package earlier. ))) Package grfext Info: Graphics extension search list: (grfext) [.png,.pdf,.jpg,.mps,.jpeg,.jbig2,.jb2,.PNG,.PDF,.JPG,.JPE G,.JBIG2,.JB2,.eps] (grfext) \AppendGraphicsExtensions on input line 452. (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/la texconfig/epstopdf-sys.cfg File: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv e )) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(28.45274pt, 540.60239pt, 28.45274pt) * v-part:(T,H,B)=(28.45274pt, 759.6886pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=540.60239pt * \textheight=759.6886pt * \oddsidemargin=-43.81725pt * \evensidemargin=-43.81725pt * \topmargin=-80.81725pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=11.0pt * \footskip=30.0pt * \marginparwidth=50.0pt * \marginparsep=10.0pt * \columnsep=10.0pt * \skip\footins=10.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) LaTeX Font Info: External font `cmex10' loaded for size (Font) <9> on input line 20. LaTeX Font Info: External font `cmex10' loaded for size (Font) <6> on input line 20. LaTeX Font Info: External font `cmex10' loaded for size (Font) <5> on input line 20. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/all_Template_length s.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ all_Template_lengths.png used on input line 44. (pdftex.def) Requested size: 162.18236pt x 108.1185pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/all_Complement_leng ths.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ all_Complement_lengths.png used on input line 45. (pdftex.def) Requested size: 162.18236pt x 108.1185pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/all_2D_lengths.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ all_2D_lengths.png used on input line 46. (pdftex.def) Requested size: 162.18236pt x 108.1185pt. [1 {/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-var/fonts/map/pdf tex/updmap/pdftex.map} ] File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Template_insertions.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Template_insertions.png used on input line 14 2. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Complement_insertions.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Complement_insertions.png used on input line 143. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_2D_insertions.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_2D_insertions.png used on input line 144. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Template_deletions.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Template_deletions.png used on input line 145 . (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Complement_deletions.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Complement_deletions.png used on input line 1 46. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_2D_deletions.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_2D_deletions.png used on input line 147. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Template_length_vs_identity_hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Template_length_vs_identity_hist.png used on input line 153. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Complement_length_vs_identity_hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Complement_length_vs_identity_hist.png used o n input line 154. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_2D_length_vs_identity_hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_2D_length_vs_identity_hist.png used on input line 155. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Template_length_vs_identity_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Template_length_vs_identity_scatter.png used on input line 156. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Complement_length_vs_identity_scatter.png Graphic file (type png ) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Complement_length_vs_identity_scatter.png use d on input line 157. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_2D_length_vs_identity_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_2D_length_vs_identity_scatter.png used on inp ut line 158. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Template_read_fraction_vs_alignment_identity_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Template_read_fraction_vs_alignment_identity_ scatter.png used on input line 159. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Complement_read_fraction_vs_alignment_identity_scatter.png Graph ic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Complement_read_fraction_vs_alignment_identit y_scatter.png used on input line 160. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_2D_read_fraction_vs_alignment_identity_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_2D_read_fraction_vs_alignment_identity_scatte r.png used on input line 161. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Template_percent_aligned_vs_length_scatter.png Graphic file (typ e png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Template_percent_aligned_vs_length_scatter.pn g used on input line 165. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Complement_percent_aligned_vs_length_scatter.png Graphic file (t ype png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Complement_percent_aligned_vs_length_scatter. png used on input line 166. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_2D_percent_aligned_vs_length_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_2D_percent_aligned_vs_length_scatter.png used on input line 167. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. [2 ] File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Template_cumulative_perfect_kmers.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Template_cumulative_perfect_kmers.png used on input line 173. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Complement_cumulative_perfect_kmers.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Complement_cumulative_perfect_kmers.png used on input line 174. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_2D_cumulative_perfect_kmers.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_2D_cumulative_perfect_kmers.png used on input line 175. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Template_best_perfect_kmers.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Template_best_perfect_kmers.png used on input line 176. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Complement_best_perfect_kmers.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Complement_best_perfect_kmers.png used on inp ut line 177. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_2D_best_perfect_kmers.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_2D_best_perfect_kmers.png used on input line 178. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Template_longest_perfect_vs_length_scatter.png Graphic file (typ e png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Template_longest_perfect_vs_length_scatter.pn g used on input line 179. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Complement_longest_perfect_vs_length_scatter.png Graphic file (t ype png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Complement_longest_perfect_vs_length_scatter. png used on input line 180. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_2D_longest_perfect_vs_length_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_2D_longest_perfect_vs_length_scatter.png used on input line 181. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Template_coverage.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Template_coverage.png used on input line 187. (pdftex.def) Requested size: 227.60759pt x 56.9055pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Complement_coverage.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Complement_coverage.png used on input line 18 8. (pdftex.def) Requested size: 227.60759pt x 56.9055pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_2D_coverage.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_2D_coverage.png used on input line 189. (pdftex.def) Requested size: 227.60759pt x 56.9055pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_gc.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_gc.png used on input line 190. (pdftex.def) Requested size: 227.60759pt x 56.9055pt. LaTeX Font Info: External font `cmex10' loaded for size (Font) <7> on input line 198. [3 ] File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Template_kmer_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Template_kmer_scatter.png used on input line 245. (pdftex.def) Requested size: 227.60759pt x 227.62204pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Complement_kmer_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Complement_kmer_scatter.png used on input lin e 246. (pdftex.def) Requested size: 227.60759pt x 227.62204pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_2D_kmer_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_2D_kmer_scatter.png used on input line 247. (pdftex.def) Requested size: 227.60759pt x 227.62204pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Template_GC_hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Template_GC_hist.png used on input line 250. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_Complement_GC_hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_Complement_GC_hist.png used on input line 251 . (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Es cherichia_coli_2D_GC_hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ Escherichia_coli/Escherichia_coli_2D_GC_hist.png used on input line 252. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. [4 ] [5 < /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/Escherichia_coli/Escheric hia_coli_2D_GC_hist.png (PNG copy)>] File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/all_Template_21mers .png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ all_Template_21mers.png used on input line 258. (pdftex.def) Requested size: 162.18236pt x 108.1185pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/all_Complement_21me rs.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ all_Complement_21mers.png used on input line 259. (pdftex.def) Requested size: 162.18236pt x 108.1185pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/all_2D_21mers.png G raphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ all_2D_21mers.png used on input line 260. (pdftex.def) Requested size: 162.18236pt x 108.1185pt. LaTeX Font Info: External font `cmex10' loaded for size (Font) <8> on input line 267. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_Template_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_Template_top_k3.png used on input line 304. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_Template_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_Template_top_k3.png used on input line 304. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_Template_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_Template_top_k3.png used on input line 304. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_Complement_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_Complement_top_k3.png used on input line 304. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_Complement_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_Complement_top_k3.png used on input line 304. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_Complement_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_Complement_top_k3.png used on input line 304. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_2D_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_2D_top_k3.png used on input line 304. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_2D_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_2D_top_k3.png used on input line 304. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_2D_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_2D_top_k3.png used on input line 304. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_Template_bottom_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_Template_bottom_k3.png used on input line 318. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_Template_bottom_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_Template_bottom_k3.png used on input line 318. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_Template_bottom_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_Template_bottom_k3.png used on input line 318. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_Complement_bottom_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_Complement_bottom_k3.png used on input line 318. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_Complement_bottom_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_Complement_bottom_k3.png used on input line 318. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_Complement_bottom_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_Complement_bottom_k3.png used on input line 318. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_2D_bottom_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_2D_bottom_k3.png used on input line 318. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_2D_bottom_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_2D_bottom_k3.png used on input line 318. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_2D_bottom_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_2D_bottom_k3.png used on input line 318. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_Template_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_Template_top_k4.png used on input line 349. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_Template_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_Template_top_k4.png used on input line 349. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_Template_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_Template_top_k4.png used on input line 349. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_Complement_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_Complement_top_k4.png used on input line 349. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_Complement_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_Complement_top_k4.png used on input line 349. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_Complement_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_Complement_top_k4.png used on input line 349. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_2D_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_2D_top_k4.png used on input line 349. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_2D_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_2D_top_k4.png used on input line 349. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_2D_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_2D_top_k4.png used on input line 349. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_Template_bottom_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_Template_bottom_k4.png used on input line 363. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_Template_bottom_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_Template_bottom_k4.png used on input line 363. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_Template_bottom_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_Template_bottom_k4.png used on input line 363. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_Complement_bottom_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_Complement_bottom_k4.png used on input line 363. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_Complement_bottom_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_Complement_bottom_k4.png used on input line 363. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_Complement_bottom_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_Complement_bottom_k4.png used on input line 363. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_2D_bottom_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_2D_bottom_k4.png used on input line 363. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_2D_bottom_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_2D_bottom_k4.png used on input line 363. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_2D_bottom_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_2D_bottom_k4.png used on input line 363. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. [6 < /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletion_Comp lement_top_k3.png (PNG copy)> ] File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_Template_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_Template_top_k5.png used on input line 394. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_Template_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_Template_top_k5.png used on input line 394. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_Template_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_Template_top_k5.png used on input line 394. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_Complement_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_Complement_top_k5.png used on input line 394. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_Complement_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_Complement_top_k5.png used on input line 394. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_Complement_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_Complement_top_k5.png used on input line 394. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_2D_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_2D_top_k5.png used on input line 394. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_2D_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_2D_top_k5.png used on input line 394. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_2D_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_2D_top_k5.png used on input line 394. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_Template_bottom_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_Template_bottom_k5.png used on input line 408. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_Template_bottom_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_Template_bottom_k5.png used on input line 408. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_Template_bottom_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_Template_bottom_k5.png used on input line 408. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_Complement_bottom_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_Complement_bottom_k5.png used on input line 408. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_Complement_bottom_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_Complement_bottom_k5.png used on input line 408. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_Complement_bottom_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_Complement_bottom_k5.png used on input line 408. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_inserti on_2D_bottom_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_insertion_2D_bottom_k5.png used on input line 408. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_deletio n_2D_bottom_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_deletion_2D_bottom_k5.png used on input line 408. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/motifs/logo_substit ution_2D_bottom_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/E.coli_MARC1_run2/graphs/ motifs/logo_substitution_2D_bottom_k5.png used on input line 408. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. [7 ] (/tgac/workarea/group-si/marc/E.coli_MARC1_run2/latex/E.coli_MARC1_run2.aux) ) Here is how much of TeX's memory you used: 3031 strings out of 493488 85100 string characters out of 3127290 135578 words of memory out of 3000000 6206 multiletter control sequences out of 15000+200000 9682 words of font info for 34 fonts, out of 3000000 for 9000 957 hyphenation exceptions out of 8191 38i,12n,29p,1383b,354s stack positions out of 5000i,500n,10000p,200000b,50000s < /tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/fonts/type1/p ublic/amsfonts/cm/cmss10.pfb> Output written on /tgac/workarea/group-si/marc/E.coli_MARC1_run2/latex/E.coli_M ARC1_run2.pdf (7 pages, 4850986 bytes). PDF statistics: 155 PDF objects out of 1000 (max. 8388607) 30 compressed objects within 1 object stream 0 named destinations out of 1000 (max. 500000) 486 words of extra memory for PDF output out of 10000 (max. 10000000)