This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012) (format=pdflatex 2013.2.1) 24 SEP 2015 23:33 entering extended mode restricted \write18 enabled. %&-line parsing enabled. **/tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_Phas e1b.1/latex/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_Phase1b.1.tex (/tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_Phase 1b.1/latex/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_Phase1b.1.tex LaTeX2e <2011/06/27> Babel and hyphenation patterns for english, dumylang, nohyphenation, ge rman-x-2012-05-30, ngerman-x-2012-05-30, afrikaans, ancientgreek, ibycus, arabi c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danis h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi, finnis h, french, friulan, galician, german, ngerman, swissgerman, monogreek, greek, h ungarian, icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam, ma rathi, oriya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian, kurmanji, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk, polish, portuguese, romanian, romansh, russian, sanskrit, serbian, serbianc, s lovak, slovenian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian, welsh, loaded. (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ba se/article.cls Document Class: article 2007/10/19 v1.4h Standard LaTeX document class (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ba se/size11.clo File: size11.clo 2007/10/19 v1.4h Standard LaTeX file (size option) ) \c@part=\count79 \c@section=\count80 \c@subsection=\count81 \c@subsubsection=\count82 \c@paragraph=\count83 \c@subparagraph=\count84 \c@figure=\count85 \c@table=\count86 \abovecaptionskip=\skip41 \belowcaptionskip=\skip42 \bibindent=\dimen102 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/gr aphics/graphicx.sty Package: graphicx 1999/02/16 v1.0f Enhanced LaTeX Graphics (DPC,SPQR) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/gr aphics/keyval.sty Package: keyval 1999/03/16 v1.13 key=value parser (DPC) \KV@toks@=\toks14 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/gr aphics/graphics.sty Package: graphics 2009/02/05 v1.0o Standard LaTeX Graphics (DPC,SPQR) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/gr aphics/trig.sty Package: trig 1999/03/16 v1.09 sin cos tan (DPC) ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/la texconfig/graphics.cfg File: graphics.cfg 2010/04/23 v1.9 graphics configuration of TeX Live ) Package graphics Info: Driver file: pdftex.def on input line 91. (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/pd ftex-def/pdftex.def File: pdftex.def 2011/05/27 v0.06d Graphics/color for pdfTeX (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/infwarerr.sty Package: infwarerr 2010/04/08 v1.3 Providing info/warning/error messages (HO) ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/ltxcmds.sty Package: ltxcmds 2011/11/09 v1.22 LaTeX kernel commands for general use (HO) ) \Gread@gobject=\count87 )) \Gin@req@height=\dimen103 \Gin@req@width=\dimen104 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ur l/url.sty \Urlmuskip=\muskip10 Package: url 2006/04/12 ver 3.3 Verb mode for urls, etc. ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/mu ltirow/multirow.sty \bigstrutjot=\dimen105 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ro tating/rotating.sty Package: rotating 2009/03/28 v2.16a rotated objects in LaTeX (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ba se/ifthen.sty Package: ifthen 2001/05/26 v1.1c Standard LaTeX ifthen package (DPC) ) \c@r@tfl@t=\count88 \rotFPtop=\skip43 \rotFPbot=\skip44 \rot@float@box=\box26 \rot@mess@toks=\toks15 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/gr aphics/color.sty Package: color 2005/11/14 v1.0j Standard LaTeX Color (DPC) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/la texconfig/color.cfg File: color.cfg 2007/01/18 v1.5 color configuration of teTeX/TeXLive ) Package color Info: Driver file: pdftex.def on input line 130. ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ti tlesec/titlesec.sty Package: titlesec 2011/12/15 v2.10.0 Sectioning titles \ttl@box=\box27 \beforetitleunit=\skip45 \aftertitleunit=\skip46 \ttl@plus=\dimen106 \ttl@minus=\dimen107 \ttl@toksa=\toks16 \titlewidth=\dimen108 \titlewidthlast=\dimen109 \titlewidthfirst=\dimen110 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ge ometry/geometry.sty Package: geometry 2010/09/12 v5.6 Page Geometry (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/ifpdf.sty Package: ifpdf 2011/01/30 v2.3 Provides the ifpdf switch (HO) Package ifpdf Info: pdfTeX in PDF mode is detected. ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/ifvtex.sty Package: ifvtex 2010/03/01 v1.5 Detect VTeX and its facilities (HO) Package ifvtex Info: VTeX not detected. ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ ifxetex/ifxetex.sty Package: ifxetex 2010/09/12 v0.6 Provides ifxetex conditional ) \Gm@cnth=\count89 \Gm@cntv=\count90 \c@Gm@tempcnt=\count91 \Gm@bindingoffset=\dimen111 \Gm@wd@mp=\dimen112 \Gm@odd@mp=\dimen113 \Gm@even@mp=\dimen114 \Gm@layoutwidth=\dimen115 \Gm@layoutheight=\dimen116 \Gm@layouthoffset=\dimen117 \Gm@layoutvoffset=\dimen118 \Gm@dimlist=\toks17 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/fl oat/float.sty Package: float 2001/11/08 v1.3d Float enhancements (AL) \c@float@type=\count92 \float@exts=\toks18 \float@box=\box28 \@float@everytoks=\toks19 \@floatcapt=\box29 ) \@float@every@table=\toks20 No file 20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_Phase1b.1.aux. \openout1 = `20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_Phase1b.1.aux'. LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 11. LaTeX Font Info: ... okay on input line 11. LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 11. LaTeX Font Info: ... okay on input line 11. LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 11. LaTeX Font Info: ... okay on input line 11. LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 11. LaTeX Font Info: ... okay on input line 11. LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 11. LaTeX Font Info: ... okay on input line 11. LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 11. LaTeX Font Info: ... okay on input line 11. (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/context/ base/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] \scratchcounter=\count93 \scratchdimen=\dimen119 \scratchbox=\box30 \nofMPsegments=\count94 \nofMParguments=\count95 \everyMPshowfont=\toks21 \MPscratchCnt=\count96 \MPscratchDim=\dimen120 \MPnumerator=\count97 \makeMPintoPDFobject=\count98 \everyMPtoPDFconversion=\toks22 ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/pdftexcmds.sty Package: pdftexcmds 2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/ifluatex.sty Package: ifluatex 2010/03/01 v1.3 Provides the ifluatex switch (HO) Package ifluatex Info: LuaTeX not detected. ) Package pdftexcmds Info: LuaTeX not detected. Package pdftexcmds Info: \pdf@primitive is available. Package pdftexcmds Info: \pdf@ifprimitive is available. Package pdftexcmds Info: \pdfdraftmode found. ) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ob erdiek/epstopdf-base.sty Package: epstopdf-base 2010/02/09 v2.5 Base part for package epstopdf (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ob erdiek/grfext.sty Package: grfext 2010/08/19 v1.1 Manage graphics extensions (HO) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/kvdefinekeys.sty Package: kvdefinekeys 2011/04/07 v1.3 Define keys (HO) )) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/ob erdiek/kvoptions.sty Package: kvoptions 2011/06/30 v3.11 Key value format for package options (HO) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/kvsetkeys.sty Package: kvsetkeys 2012/04/25 v1.16 Key value parser (HO) (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/generic/ oberdiek/etexcmds.sty Package: etexcmds 2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO) Package etexcmds Info: Could not find \expanded. (etexcmds) That can mean that you are not using pdfTeX 1.50 or (etexcmds) that some package has redefined \expanded. (etexcmds) In the latter case, load this package earlier. ))) Package grfext Info: Graphics extension search list: (grfext) [.png,.pdf,.jpg,.mps,.jpeg,.jbig2,.jb2,.PNG,.PDF,.JPG,.JPE G,.JBIG2,.JB2,.eps] (grfext) \AppendGraphicsExtensions on input line 452. (/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-dist/tex/latex/la texconfig/epstopdf-sys.cfg File: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv e )) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(28.45274pt, 540.60239pt, 28.45274pt) * v-part:(T,H,B)=(28.45274pt, 759.6886pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=540.60239pt * \textheight=759.6886pt * \oddsidemargin=-43.81725pt * \evensidemargin=-43.81725pt * \topmargin=-80.81725pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=11.0pt * \footskip=30.0pt * \marginparwidth=50.0pt * \marginparsep=10.0pt * \columnsep=10.0pt * \skip\footins=10.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) LaTeX Font Info: External font `cmex10' loaded for size (Font) <9> on input line 20. LaTeX Font Info: External font `cmex10' loaded for size (Font) <6> on input line 20. LaTeX Font Info: External font `cmex10' loaded for size (Font) <5> on input line 20. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/all_Template_lengths.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/all_Template_lengths.png used on input line 44. (pdftex.def) Requested size: 162.18236pt x 108.1185pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/all_Complement_lengths.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/all_Complement_lengths.png used on input li ne 45. (pdftex.def) Requested size: 162.18236pt x 108.1185pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/all_2D_lengths.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/all_2D_lengths.png used on input line 46. (pdftex.def) Requested size: 162.18236pt x 108.1185pt. [1 {/tgac/software/production/texlive/1.2.2013/x86_64/2012/texmf-var/fonts/map/pdf tex/updmap/pdftex.map} ] File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Template_insertions.png Grap hic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Template_ insertions.png used on input line 142. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Complement_insertions.png Gr aphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Complemen t_insertions.png used on input line 143. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_2D_insertions.png Graphic fi le (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_2D_insert ions.png used on input line 144. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Template_deletions.png Graph ic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Template_ deletions.png used on input line 145. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Complement_deletions.png Gra phic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Complemen t_deletions.png used on input line 146. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_2D_deletions.png Graphic fil e (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_2D_deleti ons.png used on input line 147. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Template_length_vs_identity_ hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Template_ length_vs_identity_hist.png used on input line 153. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Complement_length_vs_identit y_hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Complemen t_length_vs_identity_hist.png used on input line 154. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_2D_length_vs_identity_hist.p ng Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_2D_length _vs_identity_hist.png used on input line 155. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Template_length_vs_identity_ scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Template_ length_vs_identity_scatter.png used on input line 156. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Complement_length_vs_identit y_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Complemen t_length_vs_identity_scatter.png used on input line 157. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_2D_length_vs_identity_scatte r.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_2D_length _vs_identity_scatter.png used on input line 158. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Template_read_fraction_vs_al ignment_identity_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Template_ read_fraction_vs_alignment_identity_scatter.png used on input line 159. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Complement_read_fraction_vs_ alignment_identity_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Complemen t_read_fraction_vs_alignment_identity_scatter.png used on input line 160. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_2D_read_fraction_vs_alignmen t_identity_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_2D_read_f raction_vs_alignment_identity_scatter.png used on input line 161. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Template_percent_aligned_vs_ length_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Template_ percent_aligned_vs_length_scatter.png used on input line 165. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Complement_percent_aligned_v s_length_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Complemen t_percent_aligned_vs_length_scatter.png used on input line 166. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_2D_percent_aligned_vs_length _scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_2D_percen t_aligned_vs_length_scatter.png used on input line 167. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. [2 ] File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Template_cumulative_perfect_ kmers.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Template_ cumulative_perfect_kmers.png used on input line 173. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Complement_cumulative_perfec t_kmers.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Complemen t_cumulative_perfect_kmers.png used on input line 174. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_2D_cumulative_perfect_kmers. png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_2D_cumula tive_perfect_kmers.png used on input line 175. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Template_best_perfect_kmers. png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Template_ best_perfect_kmers.png used on input line 176. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Complement_best_perfect_kmer s.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Complemen t_best_perfect_kmers.png used on input line 177. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_2D_best_perfect_kmers.png Gr aphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_2D_best_p erfect_kmers.png used on input line 178. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Template_longest_perfect_vs_ length_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Template_ longest_perfect_vs_length_scatter.png used on input line 179. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Complement_longest_perfect_v s_length_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Complemen t_longest_perfect_vs_length_scatter.png used on input line 180. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_2D_longest_perfect_vs_length _scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_2D_longes t_perfect_vs_length_scatter.png used on input line 181. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Template_coverage.png Graphi c file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Template_ coverage.png used on input line 187. (pdftex.def) Requested size: 227.60759pt x 56.9055pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Complement_coverage.png Grap hic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Complemen t_coverage.png used on input line 188. (pdftex.def) Requested size: 227.60759pt x 56.9055pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_2D_coverage.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_2D_covera ge.png used on input line 189. (pdftex.def) Requested size: 227.60759pt x 56.9055pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_gc.png Graphic file (type pn g) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_gc.png us ed on input line 190. (pdftex.def) Requested size: 227.60759pt x 56.9055pt. LaTeX Font Info: External font `cmex10' loaded for size (Font) <7> on input line 198. [3 < /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_Phase1 b.1/graphs/Control_sequence/Control_sequence_Template_cumulative_perfect_kmers. png (PNG copy)> ] File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Template_kmer_scatter.png Gr aphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Template_ kmer_scatter.png used on input line 245. (pdftex.def) Requested size: 227.60759pt x 227.62204pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Complement_kmer_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Complemen t_kmer_scatter.png used on input line 246. (pdftex.def) Requested size: 227.60759pt x 227.62204pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_2D_kmer_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_2D_kmer_s catter.png used on input line 247. (pdftex.def) Requested size: 227.60759pt x 227.62204pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Template_GC_hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Template_ GC_hist.png used on input line 250. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_Complement_GC_hist.png Graph ic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_Complemen t_GC_hist.png used on input line 251. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Control_sequence/Control_sequence_2D_GC_hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Control_sequence/Control_sequence_2D_GC_his t.png used on input line 252. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. [4 ] [5 ] File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_insertions.png Grap hic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_ insertions.png used on input line 275. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complement_insertions.png Gr aphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complemen t_insertions.png used on input line 276. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_insertions.png Graphic fi le (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_insert ions.png used on input line 277. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_deletions.png Graph ic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_ deletions.png used on input line 278. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complement_deletions.png Gra phic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complemen t_deletions.png used on input line 279. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_deletions.png Graphic fil e (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_deleti ons.png used on input line 280. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_length_vs_identity_ hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_ length_vs_identity_hist.png used on input line 286. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complement_length_vs_identit y_hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complemen t_length_vs_identity_hist.png used on input line 287. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_length_vs_identity_hist.p ng Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_length _vs_identity_hist.png used on input line 288. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_length_vs_identity_ scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_ length_vs_identity_scatter.png used on input line 289. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complement_length_vs_identit y_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complemen t_length_vs_identity_scatter.png used on input line 290. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_length_vs_identity_scatte r.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_length _vs_identity_scatter.png used on input line 291. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_read_fraction_vs_al ignment_identity_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_ read_fraction_vs_alignment_identity_scatter.png used on input line 292. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complement_read_fraction_vs_ alignment_identity_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complemen t_read_fraction_vs_alignment_identity_scatter.png used on input line 293. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_read_fraction_vs_alignmen t_identity_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_read_f raction_vs_alignment_identity_scatter.png used on input line 294. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_percent_aligned_vs_ length_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_ percent_aligned_vs_length_scatter.png used on input line 298. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complement_percent_aligned_v s_length_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complemen t_percent_aligned_vs_length_scatter.png used on input line 299. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_percent_aligned_vs_length _scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_percen t_aligned_vs_length_scatter.png used on input line 300. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. [6 ] File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_cumulative_perfect_ kmers.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_ cumulative_perfect_kmers.png used on input line 306. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complement_cumulative_perfec t_kmers.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complemen t_cumulative_perfect_kmers.png used on input line 307. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_cumulative_perfect_kmers. png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_cumula tive_perfect_kmers.png used on input line 308. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_best_perfect_kmers. png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_ best_perfect_kmers.png used on input line 309. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complement_best_perfect_kmer s.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complemen t_best_perfect_kmers.png used on input line 310. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_best_perfect_kmers.png Gr aphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_best_p erfect_kmers.png used on input line 311. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_longest_perfect_vs_ length_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_ longest_perfect_vs_length_scatter.png used on input line 312. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complement_longest_perfect_v s_length_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complemen t_longest_perfect_vs_length_scatter.png used on input line 313. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_longest_perfect_vs_length _scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_longes t_perfect_vs_length_scatter.png used on input line 314. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_coverage.png Graphi c file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_ coverage.png used on input line 320. (pdftex.def) Requested size: 227.60759pt x 56.9055pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complement_coverage.png Grap hic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complemen t_coverage.png used on input line 321. (pdftex.def) Requested size: 227.60759pt x 56.9055pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_coverage.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_covera ge.png used on input line 322. (pdftex.def) Requested size: 227.60759pt x 56.9055pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_gc.png Graphic file (type pn g) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_gc.png us ed on input line 323. (pdftex.def) Requested size: 227.60759pt x 56.9055pt. [7 < /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_Phase1 b.1/graphs/Escherichia_coli/Escherichia_coli_Template_cumulative_perfect_kmers. png (PNG copy)> ] File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_kmer_scatter.png Gr aphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_ kmer_scatter.png used on input line 378. (pdftex.def) Requested size: 227.60759pt x 227.62204pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complement_kmer_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complemen t_kmer_scatter.png used on input line 379. (pdftex.def) Requested size: 227.60759pt x 227.62204pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_kmer_scatter.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_kmer_s catter.png used on input line 380. (pdftex.def) Requested size: 227.60759pt x 227.62204pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_GC_hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Template_ GC_hist.png used on input line 383. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complement_GC_hist.png Graph ic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_Complemen t_GC_hist.png used on input line 384. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_GC_hist.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/Escherichia_coli/Escherichia_coli_2D_GC_his t.png used on input line 385. (pdftex.def) Requested size: 149.36748pt x 99.58464pt. [8 ] [9 ] File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/all_Template_21mers.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/all_Template_21mers.png used on input line 391. (pdftex.def) Requested size: 162.18236pt x 108.1185pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/all_Complement_21mers.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/all_Complement_21mers.png used on input lin e 392. (pdftex.def) Requested size: 162.18236pt x 108.1185pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/all_2D_21mers.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/all_2D_21mers.png used on input line 393. (pdftex.def) Requested size: 162.18236pt x 108.1185pt. LaTeX Font Info: External font `cmex10' loaded for size (Font) <8> on input line 400. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_Template_top_k3.png Graphic file (type p ng) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_Template_top_k3.png u sed on input line 437. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_Template_top_k3.png Graphic file (type pn g) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_Template_top_k3.png us ed on input line 437. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_Template_top_k3.png Graphic file (typ e png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_Template_top_k3.pn g used on input line 437. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_Complement_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_Complement_top_k3.png used on input line 437. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_Complement_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_Complement_top_k3.png used on input line 437. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_Complement_top_k3.png Graphic file (t ype png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_Complement_top_k3. png used on input line 437. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_2D_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_2D_top_k3.png used on input line 437. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_2D_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_2D_top_k3.png used on input line 437. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_2D_top_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_2D_top_k3.png used on input line 437. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_Template_bottom_k3.png Graphic file (typ e png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_Template_bottom_k3.pn g used on input line 451. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_Template_bottom_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_Template_bottom_k3.png used on input line 451. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_Template_bottom_k3.png Graphic file ( type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_Template_bottom_k3 .png used on input line 451. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_Complement_bottom_k3.png Graphic file (t ype png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_Complement_bottom_k3. png used on input line 451. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_Complement_bottom_k3.png Graphic file (ty pe png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_Complement_bottom_k3.p ng used on input line 451. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_Complement_bottom_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_Complement_bottom_ k3.png used on input line 451. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_2D_bottom_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_2D_bottom_k3.png used on input line 451. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_2D_bottom_k3.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_2D_bottom_k3.png used on input line 451. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_2D_bottom_k3.png Graphic file (type p ng) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_2D_bottom_k3.png u sed on input line 451. (pdftex.def) Requested size: 10.6691pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_Template_top_k4.png Graphic file (type p ng) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_Template_top_k4.png u sed on input line 482. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_Template_top_k4.png Graphic file (type pn g) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_Template_top_k4.png us ed on input line 482. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_Template_top_k4.png Graphic file (typ e png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_Template_top_k4.pn g used on input line 482. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_Complement_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_Complement_top_k4.png used on input line 482. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_Complement_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_Complement_top_k4.png used on input line 482. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_Complement_top_k4.png Graphic file (t ype png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_Complement_top_k4. png used on input line 482. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_2D_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_2D_top_k4.png used on input line 482. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_2D_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_2D_top_k4.png used on input line 482. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_2D_top_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_2D_top_k4.png used on input line 482. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_Template_bottom_k4.png Graphic file (typ e png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_Template_bottom_k4.pn g used on input line 496. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_Template_bottom_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_Template_bottom_k4.png used on input line 496. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_Template_bottom_k4.png Graphic file ( type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_Template_bottom_k4 .png used on input line 496. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_Complement_bottom_k4.png Graphic file (t ype png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_Complement_bottom_k4. png used on input line 496. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_Complement_bottom_k4.png Graphic file (ty pe png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_Complement_bottom_k4.p ng used on input line 496. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_Complement_bottom_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_Complement_bottom_ k4.png used on input line 496. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_2D_bottom_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_2D_bottom_k4.png used on input line 496. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_2D_bottom_k4.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_2D_bottom_k4.png used on input line 496. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_2D_bottom_k4.png Graphic file (type p ng) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_2D_bottom_k4.png u sed on input line 496. (pdftex.def) Requested size: 14.22546pt x 14.22636pt. [10 ] File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_Template_top_k5.png Graphic file (type p ng) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_Template_top_k5.png u sed on input line 527. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_Template_top_k5.png Graphic file (type pn g) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_Template_top_k5.png us ed on input line 527. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_Template_top_k5.png Graphic file (typ e png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_Template_top_k5.pn g used on input line 527. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_Complement_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_Complement_top_k5.png used on input line 527. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_Complement_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_Complement_top_k5.png used on input line 527. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_Complement_top_k5.png Graphic file (t ype png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_Complement_top_k5. png used on input line 527. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_2D_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_2D_top_k5.png used on input line 527. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_2D_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_2D_top_k5.png used on input line 527. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_2D_top_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_2D_top_k5.png used on input line 527. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_Template_bottom_k5.png Graphic file (typ e png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_Template_bottom_k5.pn g used on input line 541. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_Template_bottom_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_Template_bottom_k5.png used on input line 541. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_Template_bottom_k5.png Graphic file ( type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_Template_bottom_k5 .png used on input line 541. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_Complement_bottom_k5.png Graphic file (t ype png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_Complement_bottom_k5. png used on input line 541. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_Complement_bottom_k5.png Graphic file (ty pe png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_Complement_bottom_k5.p ng used on input line 541. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_Complement_bottom_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_Complement_bottom_ k5.png used on input line 541. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_insertion_2D_bottom_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_insertion_2D_bottom_k5.png used on input line 541. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_deletion_2D_bottom_k5.png Graphic file (type png) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_deletion_2D_bottom_k5.png used on input line 541. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. File: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_ Phase1b.1/graphs/motifs/logo_substitution_2D_bottom_k5.png Graphic file (type p ng) Package pdftex.def Info: /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596 _BOWDEN05_MdC_MARC_Phase1b.1/graphs/motifs/logo_substitution_2D_bottom_k5.png u sed on input line 541. (pdftex.def) Requested size: 17.78183pt x 14.22636pt. [11 ] (/tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_Phase 1b.1/latex/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_Phase1b.1.aux) ) Here is how much of TeX's memory you used: 3217 strings out of 493488 125291 string characters out of 3127290 135881 words of memory out of 3000000 6354 multiletter control sequences out of 15000+200000 9682 words of font info for 34 fonts, out of 3000000 for 9000 957 hyphenation exceptions out of 8191 38i,12n,29p,1815b,354s stack positions out of 5000i,500n,10000p,200000b,50000s Output written on /tgac/workarea/group-si/marc/20150422_MN02862_FAA40596_BOWDEN 05_MdC_MARC_Phase1b.1/latex/20150422_MN02862_FAA40596_BOWDEN05_MdC_MARC_Phase1b .1.pdf (11 pages, 7896174 bytes). PDF statistics: 215 PDF objects out of 1000 (max. 8388607) 38 compressed objects within 1 object stream 0 named destinations out of 1000 (max. 500000) 671 words of extra memory for PDF output out of 10000 (max. 10000000)